at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111 ...
I'm running a somatic copy number variation pipeline using GRIDSS, GRIPSS, AMBER, COBALT and PURPLE for multiple patients. What happens is that PURPLE fails with only ...